Sure - such direct contradiction is rare - call out was the wrong phrase - that mostly only happens which people try and replicate extraordinary claims.

Much more common is another paper is published which has a different conclusion in the particular area of science which may or may not reference the original paper - ie the wrong stuff get's buried over time by the weight of other's findings.

You could say that part of the problem is correction is often incremental.

In the end the manipulation by Masliah et al came out - science tends to be incremental, rather than all big break-throughs and I'd say any system will struggle to deal with bad faith actors.

In terms of bad faith actors - you have two approaches - look at better ways to detect, and looking at the properties of the system that perhaps creates perverse incentives - but I always think it's a bad idea to focus too much on the bad actors - you risk creating more work for those who operate in good faith.