I think you don't understand. Qubes relies on software virtualization in conjunction with hardware assisted virtualization instruction sets. The aforementioned vulnerability existed in Qubes Xen.
I'm not an expert, but how could it affect the VT-d even in principle? AFAIK VM escape is impossible with software exploits in this case, only side-channel attacks are.
Have you been living under a rock [0]?
>How is it about the containers?
Container security aka OS virtualization has been quite secure for a while now.
[0] https://www.csoonline.com/article/551445/significant-virtual...