Linux has support for exFAT via FUSE since 2009. In 2013, Samsung Electronics published a Linux driver for exFAT under GPL. On 28 August 2019, Microsoft published the exFAT specification and released the patent to the Open Invention Network members. The Linux kernel introduced native exFAT support with the 5.4 release in November 2019.
How does a copyright license imply a license of a third party's patent?
Open source mpeg codecs don't come with a patent license from mpeg and friends. Neither does a open source file system driver come with a patent license from microsoft and friends.