Interesting. I can still see these "deleted" tweets when I retrieve JSON from the command line. I do not like using Twitter's user interface, especially the way it uses Javascript, so I wrote a quick shell script called 1.sh to read Twitter without using a graphical web browser.
https://news.ycombinator.com/item?id=27056734
To read the JSON, I have been experimenting with json_reformat from https://github.com/lloyd/yajl