I had a look at part of that pdf and I don't think the author really gets it. The essence of most nonlocality experiments is that if you send entangled photons off to two separate detectors with polarising filters in front of them then the correlation between the two photons getting through varies dependent on the angle between the two polarisers in a way that can only be explained by photon 1 kind of knowing what the angle of photon 2's polariser is or visa versa. How do they know that when far apart? See Bell's Theorem for more details.
Really it boils down to the fact that (to quote a very insightful comment I can no longer recall the author of) “if I flip a coin and look at it whilst hiding it from your sight, the outcome is perfectly deterministic for me but it is still perfectly random for you” (and, I'll add, the maximum speed at which I can “de-randomise” the outcome for you is by telling you what I measured (at the speed of light)).
No, there really is a difference between a flipped coin and an unobserved particle: the latter can interfere with itself. A coin will not interfere with itself after you flip it even if you don't look at the outcome.
Fair enough: single-particle-at-the-time double-slit-experiment is relevant here, but I didn't have it in mind when I was thinking of remote entangled particles being measured. My bad.
This is just getting at the basic insight that probabilities are most usefully thought of as being subjective. The coin will land on either side depending on the torque applied and air resistance and whatnot. 50% is only a measure of our subjective uncertainty. This isn't about quantum mechanics.
I'm the author, and I assure you I am (and was) aware of Bell's theorem, notwithstanding that I didn't actually mention it in the paper. Bell's theorem in no way invalidates what I said. It is in fact a theorem of its own that measuring one EPR particle cannot affect the outcome of any experiment performed on its partner.
I've argued that for years. If "collapsedness" is property of a particle, then measuring one branch of a stream of entangled particles would modulate the collapsedness of the other branch and could be used for FLT communication. The bottom line is that nobody can tell the difference between a particle whose wave function collapsed and one that didn't. The conclusions from that is that wave function collapse is fiction. That video makes the same point in a more formal way.
See https://www.youtube.com/watch?v=dEaecUuEqfc or http://www.flownet.com/ron/QM.pdf for a detailed explanation.